PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G197800.1
Common NameB456_009G197800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 260aa    MW: 28325.5 Da    PI: 4.6751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G197800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-194089255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Gorai.009G197800.1 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 89
                        69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.28E-223999No hitNo description
PROSITE profilePS5103222.3664097IPR001471AP2/ERF domain
PfamPF008474.9E-144089IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-214097IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-304098IPR001471AP2/ERF domain
SMARTSM003805.7E-3540103IPR001471AP2/ERF domain
PRINTSPR003677.9E-104152IPR001471AP2/ERF domain
PRINTSPR003677.9E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSTSVMGGFG ERKQIRRPAQ ASSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSHEAAMAY DAAARKLYGS EAKLNLPELC VGPRYPPPST NTQAAAMGNQ  120
PQNLNNSGTC SSNSPTIIRT NDVQPVYNND SVISFDSFPN ENIDSQGNPA ENNAKFGQNE  180
DGIDGFWENM CVNLPVLDES IWAEAAISLD FPVMDDPGSF ASSLVDVTGW DALQTPWCIL  240
YSYSNSHEYI MGFSGFVLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444789.11e-179PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A0D2TMU00.0A0A0D2TMU0_G
STRINGPOPTR_0002s03090.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-53ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]